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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82967427_82968545_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82967427 - 82968545
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACAACTG
5'SS Class:
major
3'SS Sequence:
CTCCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTCACT
Flanking Amino Acid:
LKTRQASKIDKEVDVVLKYL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.1
53.6
43.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.3
0.7
0.7
80
25.4
Minor 5ss
35.6
-1.6
3.5
47.4
42.6
Minor BPS
58
0.33
2.2
86.42
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013115
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013659
82965191 - 82970066
4876