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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82968689_82969379_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82968689 - 82969379
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCTTTGATT
Flanking Amino Acid:
PHLKTGVSLYGVIRFFDERS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.4
0.55
0.8
69.4
36.6
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
64.3
0.53
1.2
74.27
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013115
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013659
82965191 - 82970066
4876