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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82984977_82986345_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82984977 - 82986345
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
AGCTGATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GCTTTCCTAACT
Flanking Amino Acid:
HGCLSCAAGEEIKFQAVSRH
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
70
0.5
1
67
39.8
Major PPT
71.3
0.48
1
66.2
43.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
66.4
0.59
1.7
81.08
40.4

Associated Gene:

Gene:
SBK2
Ensembl Gene ID:
ENSAPLG00000021365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019779
82984597 - 82994669
10073