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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82992466_82993232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82992466 - 82993232
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTTCCCATTC
Flanking Amino Acid:
HVVLVTHRQRGTPMALKLLP
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73.1
0.52
0.8
65.7
34.9
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
44.5
-0.4
2
58.52
41

Associated Gene:

Gene:
SBK2
Ensembl Gene ID:
ENSAPLG00000021365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019779
82984597 - 82994669
10073