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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_82993436_82993694_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82993436 - 82993694
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACCAA
U12 Branch Point Sequence:
CTCTCCCCATGC
Flanking Amino Acid:
KDLISIIKPRDGIPEPAAKQ
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
49
-0
1.2
58.8
37.4
Major PPT
75.8
0.58
0.8
70
29.7
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
40.1
-0.7
2.2
50.79
46

Associated Gene:

Gene:
SBK2
Ensembl Gene ID:
ENSAPLG00000021365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019779
82984597 - 82994669
10073