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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83010333_83011292_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83010333 - 83011292
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTCTTTCACA
Flanking Amino Acid:
GIDCLQKGTNDMKQQHVIET
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.5
0.8
0.8
79.9
31.5
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
65.9
0.49
1.7
74.8
36.6

Associated Gene:

Gene:
CCT5
Ensembl Gene ID:
ENSAPLG00000012960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013511
83010156 - 83017489
7334
ENSAPLT00000039146
82947683 - 83017489
69807