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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83013017_83013446_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83013017 - 83013446
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGTTGTTTAATT
Flanking Amino Acid:
VRWVGGPEIELIAIATGGRI
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.9
0.63
0.9
75.5
38.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
63
0.49
1.8
77.12
39.8

Associated Gene:

Gene:
CCT5
Ensembl Gene ID:
ENSAPLG00000012960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013511
83010156 - 83017489
7334
ENSAPLT00000039146
82947683 - 83017489
69807