About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83018484_83021052_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83018484 - 83021052
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAAGT
Flanking Amino Acid:
ADIGSGDGRVVIAAAKMGFK
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.6
0.71
0.7
77
25
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
61.9
0.45
1.7
74.34
43.4

Associated Gene:

Gene:
ATPSCKMT
Ensembl Gene ID:
ENSAPLG00000012867
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013393
83018200 - 83026193
7994