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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83021191_83022223_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83021191 - 83022223
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATTTCTTTAAGG
Flanking Amino Acid:
TKFYISDLWKVSFSHYTNVV
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
70
0.49
1.7
73.4
39.4

Associated Gene:

Gene:
ATPSCKMT
Ensembl Gene ID:
ENSAPLG00000012867
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013393
83018200 - 83026193
7994