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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83022275_83025904_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83022275 - 83025904
Intron Length:
3630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGTTCCTGAAAG
Flanking Amino Acid:
NVVIFGVPQMMPQLEKKLKE
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
71.6
0.49
0.9
64.6
36.6
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
66
0.36
1.7
71.05
41.1

Associated Gene:

Gene:
ATPSCKMT
Ensembl Gene ID:
ENSAPLG00000012867
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013393
83018200 - 83026193
7994