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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83043499_83045098_F

Intron Information:

Intron Rank:
139886
Intron Class:
major
Intron Phase:
Intron Coordinates:
83043499 - 83045098
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
58.9
0.36
1.9
80.81
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033042
83043398 - 83046499
3102
ENSAPLT00000025408
83040170 - 83046192
6023