Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83045234_83045499_F

Intron Information:

Intron Rank:

139888

Intron Class:

major

Intron Phase:

Intron Coordinates:

83045234 - 83045499

Intron Length:

266

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTGAGTCAG

5'SS Class:

major

3'SS Sequence:

GTCTTTGTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTAAACTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

58.6

42.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

69.9

0.45

1.1

70.1

39.4

Minor 5ss

29.4

-2.4

2.8

28.7

36.9

Minor BPS

57.2

0.09

1.8

64.06

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025202

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033042

83043398 - 83046499

3102