About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83063143_83068373_R

Intron Information:

Intron Rank:
136153
Intron Class:
major
Intron Phase:
Intron Coordinates:
83063143 - 83068373
Intron Length:
5231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCACAA
5'SS Class:
major
3'SS Sequence:
TTTCAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTATATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
58.7
42.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.6
0.78
0.8
81.6
34.6
Minor 5ss
35.4
-1.7
3.4
47.2
48.2
Minor BPS
60.2
0.32
1.7
74.64
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039626
83062753 - 83068388
5636