About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83089971_83111866_F

Intron Information:

Intron Rank:
150774
Intron Class:
major
Intron Phase:
Intron Coordinates:
83089971 - 83111866
Intron Length:
21896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
85.4
0.8
0.8
80.7
29.7
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
81.6
1.08
1.4
96.2
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026799
83089899 - 83132857
42959