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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83104041_83119606_F

Intron Information:

Intron Rank:
150785
Intron Class:
major
Intron Phase:
Intron Coordinates:
83104041 - 83119606
Intron Length:
15566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTAATTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.78
0.9
77
41.9
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
48.6
-0.1
1.9
66.32
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040765
83103909 - 83137400
33492