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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83119653_83132526_F

Intron Information:

Intron Rank:
150776
Intron Class:
major
Intron Phase:
Intron Coordinates:
83119653 - 83132526
Intron Length:
12874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTTCTCCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
48.3
-0.2
2
58.48
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026799
83089899 - 83132857
42959
ENSAPLT00000040765
83103909 - 83137400
33492
ENSAPLT00000035117
83111705 - 83137400
25696