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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83129634_83132526_F

Intron Information:

Intron Rank:
150779
Intron Class:
major
Intron Phase:
Intron Coordinates:
83129634 - 83132526
Intron Length:
2893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTTCTCCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
48.3
-0.2
2
58.48
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028487
83129528 - 83181336
51809