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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83132600_83181016_F

Intron Information:

Intron Rank:
150780
Intron Class:
major
Intron Phase:
Intron Coordinates:
83132600 - 83181016
Intron Length:
48417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TCCTCTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CCATGCTGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.4
36.6
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
75.5
0.57
0.7
69
31.5
Minor 5ss
35.9
-1.6
3.2
51.5
44.9
Minor BPS
48.5
-0.2
2
52.76
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028487
83129528 - 83181336
51809