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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83184117_83185728_R

Intron Information:

Intron Rank:
131878
Intron Class:
major
Intron Phase:
Intron Coordinates:
83184117 - 83185728
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTAACATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
74.8
0.56
0.8
68.5
31.9
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
57.8
0.32
1.9
79.38
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030740
83183672 - 83203723
20052