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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83186045_83199140_R

Intron Information:

Intron Rank:
131879
Intron Class:
major
Intron Phase:
Intron Coordinates:
83186045 - 83199140
Intron Length:
13096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCAACACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGGACATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
69.6
0.44
1
58.9
41.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
49.7
-0
1.9
63.01
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030740
83183672 - 83203723
20052