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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83199259_83203670_R

Intron Information:

Intron Rank:
131880
Intron Class:
major
Intron Phase:
Intron Coordinates:
83199259 - 83203670
Intron Length:
4412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
GTGATTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTGCCTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
78.9
0.65
1
72.3
42.5
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
49.5
0.04
2
71.69
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030740
83183672 - 83203723
20052