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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8321632_8321817_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8321632 - 8321817
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
HALAFQQKFHRHMIDLSHIN
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
RBM33
Ensembl Gene ID:
ENSAPLG00000007387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007669
8226534 - 8321866
95333