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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83322743_83343202_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83322743 - 83343202
Intron Length:
20460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTACAGTAACA
Flanking Amino Acid:
RAEHPVITYKEIAPWLHVFR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.9
76.9
37.2
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
55.5
0.17
2.3
77.58
38.9

Associated Gene:

Gene:
SEMA5A
Ensembl Gene ID:
ENSAPLG00000006152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028203
83225112 - 83548305
323194
ENSAPLT00000023474
83302222 - 83549838
247617
ENSAPLT00000006403
83302222 - 83570415
268194