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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83343303_83358696_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83343303 - 83358696
Intron Length:
15394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
PGQKELIAGARNYLFRLRLE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
SEMA5A
Ensembl Gene ID:
ENSAPLG00000006152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028203
83225112 - 83548305
323194
ENSAPLT00000023474
83302222 - 83549838
247617
ENSAPLT00000006403
83302222 - 83570415
268194