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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83429744_83434445_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83429744 - 83434445
Intron Length:
4702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTAACGTTACTT
Flanking Amino Acid:
PYPNPNPNFQCGTMDQGLYV
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.9
36.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
34.8
-1.7
3.4
48.2
47.5
Minor BPS
46.5
-0.1
2.3
66.22
44.4

Associated Gene:

Gene:
SEMA5A
Ensembl Gene ID:
ENSAPLG00000006152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006403
83302222 - 83570415
268194
ENSAPLT00000028203
83225112 - 83548305
323194
ENSAPLT00000023474
83302222 - 83549838
247617