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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83434651_83455025_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83434651 - 83455025
Intron Length:
20375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTTCGTAACT
Flanking Amino Acid:
MLFHIIYLATDYGTIKKVLA
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
82.8
0.74
0.8
76.6
31.9
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
74.4
0.84
2
95.32
31.5

Associated Gene:

Gene:
SEMA5A
Ensembl Gene ID:
ENSAPLG00000006152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028203
83225112 - 83548305
323194
ENSAPLT00000023474
83302222 - 83549838
247617
ENSAPLT00000006403
83302222 - 83570415
268194