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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83540679_83544374_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83540679 - 83544374
Intron Length:
3696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTTTCTCCATG
Flanking Amino Acid:
ACTSDSNFIPEISVARSSSI
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
52.1
-0
2
66.82
41.6

Associated Gene:

Gene:
SEMA5A
Ensembl Gene ID:
ENSAPLG00000006152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006403
83302222 - 83570415
268194
ENSAPLT00000028203
83225112 - 83548305
323194
ENSAPLT00000023474
83302222 - 83549838
247617