Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8356377_8360976_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8356377 - 8360976

Intron Length:

4600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGCCA

5'SS Class:

major

3'SS Sequence:

CGTGTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCGCAA

U12 Branch Point Sequence:

GCCCCCGCAACC

Flanking Amino Acid:

NTGADRLMTQRCKDKLNALA

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.1

56.5

42.4

Major BPS

44.4

-0.3

1.3

48.9

36.6

Major PPT

69.3

0.43

0.9

62.1

34.8

Minor 5ss

-2.4

3.5

39.1

46.2

Minor BPS

44.6

-0.4

2.2

52.77

44.6

Associated Gene:

Gene:

SHH

Ensembl Gene ID:

ENSAPLG00000007226

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007497

8350275 - 8361285

11011