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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_835644_840682_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
835644 - 840682
Intron Length:
5039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATCT
Flanking Amino Acid:
KVEFTPDQIEEFKEAFSLFD
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
52
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
MYL3
Ensembl Gene ID:
ENSAPLG00000005814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006042
830651 - 863589
32939