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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8369203_8374490_F

Intron Information:

Intron Rank:
148113
Intron Class:
major
Intron Phase:
Intron Coordinates:
8369203 - 8374490
Intron Length:
5288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATGCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
79.4
29.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.8
81.3
30.3
Minor 5ss
38.6
-1.3
3.3
53.2
45
Minor BPS
57.7
0.32
1.7
72.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029744
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023437
8369117 - 8374834
5718