Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83716017_83717328_R

Intron Information:

Intron Rank:

150764

Intron Class:

major

Intron Phase:

Intron Coordinates:

83716017 - 83717328

Intron Length:

1312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTACGTCTG

5'SS Class:

major

3'SS Sequence:

TTAACTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.2

58.5

45.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

80.8

0.69

0.9

77.7

36.3

Minor 5ss

39.3

-1.2

3.3

55.5

Minor BPS

88.9

1.3

0.8

99.22

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028610

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044823

83710955 - 83717386

6432

ENSAPLT00000021021

83715510 - 83717386

1877