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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8376331_8376999_F

Intron Information:

Intron Rank:
148116
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8376331 - 8376999
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGGTA
5'SS Class:
major
3'SS Sequence:
GTAATAAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTCTGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
65.9
39.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
49.1
-0
1.1
39.3
42.7
Minor 5ss
31.5
-2.1
3.8
46.2
49
Minor BPS
61.3
0.35
2
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029744
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037596
8374473 - 8378168
3696
ENSAPLT00000044167
8374473 - 8378168
3696