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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8377176_8377734_F

Intron Information:

Intron Rank:
148117
Intron Class:
major
Intron Phase:
Intron Coordinates:
8377176 - 8377734
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTGGTACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
65.3
40.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.5
0.71
0.8
73.9
36.1
Minor 5ss
34.7
-1.7
2.9
37.5
39.7
Minor BPS
39.9
-0.6
2
55.9
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029744
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037596
8374473 - 8378168
3696