About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83853783_83854746_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83853783 - 83854746
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
LKDSGYFYVCGDKKHMADGV
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
85.4
34.1
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
MTRR
Ensembl Gene ID:
ENSAPLG00000008057
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027906
83852349 - 83874467
22119
ENSAPLT00000008404
83852349 - 83890003
37655