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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83856615_83858662_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83856615 - 83858662
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TACTCTTCAATT
Flanking Amino Acid:
TKEGSPPTEEISIFARPNNT
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.5
0.55
0.9
71.4
39.1
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
65.3
0.56
1.5
77.09
39.9

Associated Gene:

Gene:
MTRR
Ensembl Gene ID:
ENSAPLG00000008057
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027906
83852349 - 83874467
22119
ENSAPLT00000008404
83852349 - 83890003
37655