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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83863290_83864909_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
83863290 - 83864909
Intron Length:
1620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
CCCCCCTAAACT
Flanking Amino Acid:
VKVKEGTKKKGASRPQHIPE
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
54.7
0.11
0.9
48
32.9
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
57
0.3
1.8
68.71
48

Associated Gene:

Gene:
MTRR
Ensembl Gene ID:
ENSAPLG00000008057
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027906
83852349 - 83874467
22119
ENSAPLT00000008404
83852349 - 83890003
37655