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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83868145_83869200_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83868145 - 83869200
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
YDTGLADDCVGLELVVDPWI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.1
0.7
0.7
73.3
31.6
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
MTRR
Ensembl Gene ID:
ENSAPLG00000008057
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027906
83852349 - 83874467
22119
ENSAPLT00000008404
83852349 - 83890003
37655