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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83875942_83879072_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83875942 - 83879072
Intron Length:
3131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TTCACCTGAAAA
Flanking Amino Acid:
FSPYFLQHLQAQPPGLDRFV
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
84.7
0.78
0.8
81.7
35.4
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
60.6
0.33
1.6
70.74
40.8

Associated Gene:

Gene:
FASTKD3
Ensembl Gene ID:
ENSAPLG00000008569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008912
83874868 - 83883145
8278