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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83879901_83880385_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83879901 - 83880385
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTATACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
EVSTPYFYIVDIEIKLDEEG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.4
0.37
1
60.2
40.1
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
FASTKD3
Ensembl Gene ID:
ENSAPLG00000008569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008912
83874868 - 83883145
8278