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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83880456_83881702_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83880456 - 83881702
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATCTATAATA
Flanking Amino Acid:
PAAQCEEVHKRIALCVDGRN
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.1
0.52
0.9
70.3
40.1
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
61.5
0.36
1.6
70.02
36

Associated Gene:

Gene:
FASTKD3
Ensembl Gene ID:
ENSAPLG00000008569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008912
83874868 - 83883145
8278