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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83885786_83889886_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83885786 - 83889886
Intron Length:
4101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCCTT
5'SS Class:
major
3'SS Sequence:
TACATTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTCACA
Flanking Amino Acid:
KSLGLHVNDEEMARPVAVLS
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.9
71.8
37.7
Minor 5ss
49.3
-0
2.9
74
42.4
Minor BPS
49.2
-0
1.8
60.18
40.2

Associated Gene:

Gene:
C5orf49
Ensembl Gene ID:
ENSAPLG00000008637
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008972
83885606 - 83896916
11311