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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83890004_83892444_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83890004 - 83892444
Intron Length:
2441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
KLSYFYREAQAGGVSTYDSI
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73
0.52
1
71.8
38.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
C5orf49
Ensembl Gene ID:
ENSAPLG00000008637
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008972
83885606 - 83896916
11311