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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83908865_83910481_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83908865 - 83910481
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATCTCAATAATA
Flanking Amino Acid:
LNEIIADFDDLLSKPKFSGV
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
79.1
34
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
46.9
-0.3
2.5
65.6
38.4
Minor BPS
53.9
0.12
1.9
68.04
38.2

Associated Gene:

Gene:
ADCY2
Ensembl Gene ID:
ENSAPLG00000008644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017689
83901280 - 84105105
203826
ENSAPLT00000009050
83901280 - 84105105
203826
ENSAPLT00000044080
83901280 - 84105105
203826
ENSAPLT00000042554
83901280 - 84105105
203826
ENSAPLT00000027227
83901280 - 84105105
203826