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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83910629_83916104_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83910629 - 83916104
Intron Length:
5476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAG
U12 Branch Point Sequence:
TTCTTTTGGACA
Flanking Amino Acid:
HFLARNLKNEDLYHQSYDCV
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
40
-0.6
1.4
32.4
34.9
Major PPT
76.8
0.6
1
75.5
38.4
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
59.4
0.29
1.4
69.99
36.5

Associated Gene:

Gene:
ADCY2
Ensembl Gene ID:
ENSAPLG00000008644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027227
83901280 - 84105105
203826
ENSAPLT00000017689
83901280 - 84105105
203826
ENSAPLT00000009050
83901280 - 84105105
203826
ENSAPLT00000044080
83901280 - 84105105
203826