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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83924425_83929934_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83924425 - 83929934
Intron Length:
5510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAATTCTAAATA
Flanking Amino Acid:
CIQNNCFFLPYFIYSCILGL
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.6
0.71
0.9
76.7
37.4
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
54.4
0.13
1.7
60.47
40

Associated Gene:

Gene:
ADCY2
Ensembl Gene ID:
ENSAPLG00000008644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040624
83901280 - 84105105
203826
ENSAPLT00000017689
83901280 - 84105105
203826
ENSAPLT00000009050
83901280 - 84105105
203826
ENSAPLT00000044080
83901280 - 84105105
203826
ENSAPLT00000042554
83901280 - 84105105
203826