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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_83965416_83966770_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
83965416 - 83966770
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGGGCC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TATTTTGTACTT
Flanking Amino Acid:
TTENGKISTTDVPMGQYHFQ
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.1
56.3
37
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31.3
-2.1
3.8
46.8
43.1
Minor BPS
48
-0
2.2
71.67
40.4

Associated Gene:

Gene:
ADCY2
Ensembl Gene ID:
ENSAPLG00000008644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017689
83901280 - 84105105
203826
ENSAPLT00000044080
83901280 - 84105105
203826
ENSAPLT00000009050
83901280 - 84105105
203826
ENSAPLT00000042554
83901280 - 84105105
203826
ENSAPLT00000040624
83901280 - 84105105
203826
ENSAPLT00000027227
83901280 - 84105105
203826