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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_840711_863264_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
840711 - 863264
Intron Length:
22554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATCT
Flanking Amino Acid:
EVEFNPASIKVEFTPDQIEE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
80.7
31.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.1
0.83
0.7
85.1
29.7
Minor 5ss
48.1
-0.2
2.4
63.2
35.1
Minor BPS
60.8
0.42
1.6
74.5
43.2

Associated Gene:

Gene:
MYL3
Ensembl Gene ID:
ENSAPLG00000005814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006042
830651 - 863589
32939