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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84086775_84104871_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84086775 - 84104871
Intron Length:
18097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CAGTTTTTAACT
Flanking Amino Acid:
LLAVFFATGLEIEDHVAFLI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.2
39.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
29.7
-2.3
3.5
37.8
42.4
Minor BPS
70.1
0.71
1.2
76.03
41.2

Associated Gene:

Gene:
ADCY2
Ensembl Gene ID:
ENSAPLG00000008644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017689
83901280 - 84105105
203826
ENSAPLT00000044080
83901280 - 84105105
203826
ENSAPLT00000009050
83901280 - 84105105
203826
ENSAPLT00000042554
83901280 - 84105105
203826
ENSAPLT00000040624
83901280 - 84105105
203826
ENSAPLT00000027227
83901280 - 84105105
203826