Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84126129_84135854_R

Intron Information:

Intron Rank:

140029

Intron Class:

major

Intron Phase:

Intron Coordinates:

84126129 - 84135854

Intron Length:

9726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGATTTTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.3

0.97

0.7

89.4

25.4

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

57.2

0.31

1.6

72.55

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028851

84125935 - 84136536

10602