About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_84136163_84136328_R

Intron Information:

Intron Rank:
140030
Intron Class:
major
Intron Phase:
Intron Coordinates:
84136163 - 84136328
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
TTCATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022730
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028851
84125935 - 84136536
10602